Re: [R] Problem installing tseries under FC7 x86_64

From: Gavin Simpson <gavin.simpson_at_ucl.ac.uk>
Date: Wed, 07 May 2008 21:30:45 +0100

On Wed, 2008-05-07 at 21:09 +0100, Michael Steinbeck-Reeves wrote:
> I have just installed the 64 bit version of R, using yum. The version
> is: 2.6.2-1.fc7.1.x86_64.

Could it be that you don't have the development "headers" for R? Try:

yum install R-devel

as root in a console and then try installing tseries within R.

HTH G

>
> I installed zoo without any major problem and the same with quadprog (a
> few warnings). However, when I came to install tseries I get the
> following:
>
> install.packages()
> Warning in install.packages() :
> argument 'lib' is missing: using
> '/home/xxxxxx/R/x86_64-redhat-linux-gnu-library/2.6'
> trying URL
> 'http://cran.uk.r-project.org/src/contrib/tseries_0.10-14.tar.gz'
> Content type 'application/x-gzip' length 171219 bytes (167 Kb)
> opened URL
> ==================================================
> downloaded 167 Kb
>
> * Installing *source* package 'tseries' ...
> ** libs
> gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
> -I/usr/local/include -fpic -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -c arma.c -o arma.o
> gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
> -I/usr/local/include -fpic -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -c bdstest.c -o bdstest.o
> bdstest.c:25:15: error: R.h: No such file or directory
> bdstest.c: In function ‘freeall’:
> bdstest.c:86: warning: implicit declaration of function ‘Free’
> bdstest.c: In function ‘evalc’:
> bdstest.c:172: warning: implicit declaration of function ‘Rprintf’
> bdstest.c: In function ‘fkc’:
> bdstest.c:289: warning: implicit declaration of function ‘Calloc’
> bdstest.c:289: error: expected expression before ‘int’
> bdstest.c:289: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:290: error: expected expression before ‘int’
> bdstest.c:290: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:295: error: expected expression before ‘struct’
> bdstest.c:295: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:300: error: expected expression before ‘short’
> bdstest.c:300: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:307: error: expected expression before ‘short’
> bdstest.c:307: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:309: warning: implicit declaration of function ‘error’
> bdstest.c:352: warning: implicit declaration of function ‘qsort’
> make: *** [bdstest.o] Error 1
> ERROR: compilation failed for package 'tseries'
> ** Removing '/home/xxxxx/R/x86_64-redhat-linux-gnu-library/2.6/tseries'
>
> The downloaded packages are in
> /tmp/RtmpocpCZU/downloaded_packages
> Warning message:
> In install.packages() :
> installation of package 'tseries' had non-zero exit status
>
> I realise that R.h is missing and is not on my machine anywhere. What
> have I missed?
>
> Thanks,
>
> Michael
>
> ______________________________________________
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 Dr. Gavin Simpson             [t] +44 (0)20 7679 0522
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Received on Wed 07 May 2008 - 21:01:32 GMT

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