Re: [R] heatmap on pre-established hclust output?

From: Jeremiah Rounds <jeremiahrounds_at_hotmail.com>
Date: Fri, 16 May 2008 09:23:14 -0700

> To: r-help_at_stat.math.ethz.ch> From: johannes_graumann_at_web.de> Date: Fri, 16 May 2008 17:55:26 +0200> Subject: [R] heatmap on pre-established hclust output?> > Hi,> > Can someone please guide me towards how to produce "heatmap" output from the> output of "hclust" run prior to the actual "heatmap" call? I have some> rather lengthy clustering going on and tweeking the visual output> with "heatmap" recalculating the clustering every time is not feasible.> > Thanks, Joh
 

I can't say that i have actually tackled this, but I have some experience with the functions you mentioned. Heatmap takes an hclustfun function parameter. You can create a custom clustering function. I don't believe there is a rule that says you have to do actual work in that function call. Look at just returning the results of your more complicated clustering in that call without actually doing the calculations.  

Jeremiah Rounds
Graduate Student
Utah State University  

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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Fri 16 May 2008 - 17:20:34 GMT

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