Re: [R] robust mlm in R?

From: Michael Friendly <>
Date: Mon, 02 Jun 2008 09:51:15 -0400

I had no on-list replies, so I cobbled up a function for the simplest method I could think of -- iterative multivariate trimming, following Gnanadesikan, Kettering & Wilks, assigning 0 weights to observations based on the Mahalanobis D^2 of residuals.

But I'm getting an error I don't understand, and neither traceback() nor browser() gives me any insight. Can anyone tell me what is wrong with the lm() call in rmlm.GKW below?

 > iris.rmod <- rmlm.GKW(cbind(Sepal.Length, Sepal.Width, Petal.Length, Petal.Width)~Species, data=iris)
Error in model.frame.default(formula = formula, data = data, subset = subset, :

   invalid type (closure) for variable '(weights)'  >

Here are the functions:

# Mahalanobis Dsq for a matrix of variables dsq <- function(x, Sigma) {

   if (missing(Sigma)) Sigma <- cov(x, use="complete.obs")    dev <- scale(x, scale=FALSE)
# DSQ <- dev %*% solve(Sigma) %*% t(dev )

   DSQ <- apply(dev * (dev %*% solve(Sigma)), 1, sum)    return(DSQ)

# robust mlm via multivariate trimming a la Gnanadesikan, Kettering & Wilks rmlm.GKW <- function(formula, data, subset, weights=NULL, iter=3, pvalue=.01) {

   if (missing(weights) | is.null(weights)) { weights <- rep(1, nrow(data)) }

   last.weights <- weights
   for (i in 1:iter) {

     mod <- lm(formula=formula, data=data, subset=subset, weights=weights)
     res <- residuals(mod)
     coef <- mod$coefficients
     print (coef)
     p <- ncol(res)
     DSQ <- dsq(res)
     prob <- pchisq(DSQ, p, lower.tail=FALSE)
     weights <- ifelse( prob<pvalue, 0, weights)
     nzero <- which(weights=0)
     print (nzero)
     if (all.equal(weights, last.weights)) { break }

Michael Friendly wrote:
> I'm looking for something in R to fit a multivariate linear model
> robustly, using
> an M-estimator or any of the myriad of other robust methods for linear
> models
> implemented in robustbase or methods based on MCD or MVE covariance
> estimation (package rrcov).
> E.g., one can fit an mlm for the iris data as:
> iris.mod <- lm(cbind(Sepal.Length, Sepal.Width, Petal.Length,
> Petal.Width) ~ Species, data=iris)
> What I'd like is something like rlm() in MASS, but handling an mlm, e.g.,
> iris.mod <- rmlm(cbind(Sepal.Length, Sepal.Width, Petal.Length,
> Petal.Width) ~ Species, data=iris)
> and returning a vector of observation weights in its result.
> There's a burgeoning literature on this topic, but I haven't yet found
> computational methods.
> Any pointers or suggestions would be appreciated.
> -Michael

Michael Friendly     Email: friendly AT yorku DOT ca
Professor, Psychology Dept.
York University      Voice: 416 736-5115 x66249 Fax: 416 736-5814
4700 Keele Street
Toronto, ONT  M3J 1P3 CANADA

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Received on Mon 02 Jun 2008 - 14:17:32 GMT

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