Re: [R] save workspace while running R on a cluster

From: milton ruser <milton.ruser_at_gmail.com>
Date: Thu, 12 Jun 2008 15:42:29 -0300

Hi Manisha,

How about you incluse something like this on your script.R:

setwd("/your/full/working/directory") # ?setwd save.image() # or save.image("your_workspace.RDA").

By the way, I donīt know if you added the line below to run in background: R --save < calculate.R >& script.out

May be the rigth thing is
R --save < calculate.R > script.out &

Good luck.

miltinho
Brazil

On 6/12/08, Manisha Brahmachary <mb3058_at_c2b2.columbia.edu> wrote:
>
> Hello,
>
>
>
> I have a question about running R in a cluster environment. The shell
> script
> I am running looks like this:
>
>
>
> #!/bin/bash
>
> cd /nfs/apollo/2/c2b2/users/mb0001/Data
>
>
> /nfs/apollo/1/shares/software/core_facility/local/x86_64_rocks/R/current/bin/
> R --save < calculate.R >& script.out
>
>
>
> I have used the "-save" command to save the R workspace (If, I understand
> it
> correctly) . However, I am unable to find the workspace file.
>
> Using find .RData did not help.
>
>
>
> I would be obliged if someone can help me figure out where the workspace
> file
> gets saved?
>
>
>
> Thanks
>
> manisha
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
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