Re: [R] Error in bugs.run -- R2WinBUGS

From: Cleber Nogueira Borges <klebyn_at_yahoo.com.br>
Date: Sat, 21 Jun 2008 11:36:43 -0300

Hello Uwe Ligges,
Thanks for your attention

I run the code with option: debug=T, so I get the log file! I think that the stone in my shoe is: "educational version cannot do this model"...
Am I right?

TIA
Cleber


display(log)
check(C:/Documents and Settings/cborges/Meus documentos/bugsWD/qwzx.txt) model is syntactically correct
data(C:/Documents and Settings/cborges/Meus documentos/bugsWD/data.txt) data loaded
compile(4)
educational version cannot do this model inits(1,C:/Documents and Settings/cborges/Meus documentos/bugsWD/inits1.txt) command #Bugs:inits cannot be executed (is greyed out) inits(2,C:/Documents and Settings/cborges/Meus documentos/bugsWD/inits2.txt) command #Bugs:inits cannot be executed (is greyed out) inits(3,C:/Documents and Settings/cborges/Meus documentos/bugsWD/inits3.txt) command #Bugs:inits cannot be executed (is greyed out) inits(4,C:/Documents and Settings/cborges/Meus documentos/bugsWD/inits4.txt) command #Bugs:inits cannot be executed (is greyed out) gen.inits()
command #Bugs:gen.inits cannot be executed (is greyed out) thin.updater(3)
update(834)
command #Bugs:update cannot be executed (is greyed out) set(alpha)
command #Bugs:set cannot be executed (is greyed out) set(beta)
command #Bugs:set cannot be executed (is greyed out) set(sigma.mi)
command #Bugs:set cannot be executed (is greyed out) set(sigma.ir)
command #Bugs:set cannot be executed (is greyed out) set(sigma.mir)
command #Bugs:set cannot be executed (is greyed out) set(deviance)
command #Bugs:set cannot be executed (is greyed out) dic.set()
command #Bugs:dic.set cannot be executed (is greyed out) update(834)
command #Bugs:update cannot be executed (is greyed out) coda(*,C:/Documents and Settings/cborges/Meus documentos/bugsWD/coda) command #Bugs:coda cannot be executed (is greyed out) stats(*)
command #Bugs:stats cannot be executed (is greyed out) dic.stats()

DIC
history(*,C:/Documents and Settings/cborges/Meus documentos/bugsWD/history.odc)
command #Bugs:history cannot be executed (is greyed out) save(C:/Documents and Settings/cborges/Meus documentos/bugsWD/log.odc) save(C:/Documents and Settings/cborges/Meus documentos/bugsWD/log.txt)

> Yes: Please do what the error message tells you to do.
>
> Uwe Ligges
>
> Cleber Nogueira Borges wrote:
>>
>> Hi,
>>
>> I tried to use MethComp library and this library make use of the
>> WinBUGS by R2WinBuGUS,
>> but I get the follow error in bugs.run:
>>
>> *Error in bugs.run(n.burnin, bugs.directory, WINE = WINE, useWINE =
>> useWINE, : *
>> Look at the log file and
>> try again with 'debug=TRUE' to figure out what went wrong within Bugs.
>>
>> Anyone can help-me, please?
>> Thanks
>>
>> Cleber
>>
>>
>>
>> library( MethComp )
>> library( R2WinBUGS )
>> library( Epi )
>> # source("c:/stat/r/bxc/library.sources/methcomp/r/tab.repl.r")
>> # source("c:/stat/r/bxc/library.sources/methcomp/r/MCx.r")
>> # The oximetry example
>> #-------------------------------------------------------------------------------
>>
>> # First the full story
>> data( ox )
>> str( ox )
>> tab.repl( ox )
>> *options( bugs.directory="c:/R/WinBUGS14/")*
>> ( ox.mi.ir <- MethComp( ox, n.iter=5000 ) )
>> Comparison of 2 methods, using 354 measurements
>> on 61 items, with up to 3 replicate measurements,
>> (with the values in the set: 1 2 3 )
>> ( 2 * 61 * 3 = 366 ):
>>
>> No. items with measurements on each method:
>>
>> Simulation run of a model with
>> - method by item and item by replicate interaction:
>> - using 4 chains run for 5000 iterations
>> (of which 2500 are burn-in),
>> - monitoring every 3 values of the chain:
>> - giving a posterior sample of 3333 observations.
>>
>> *Error in bugs.run(n.burnin, bugs.directory, WINE = WINE, useWINE =
>> useWINE, : *
>> Look at the log file and
>> try again with 'debug=TRUE' to figure out what went wrong within Bugs.
>> In addition: Warning message:
>> In pt(q, df, lower.tail, log.p) : NaNs produced
>> >
>>
>>
>> > sessionInfo()
>> R version 2.7.0 (2008-04-22)
>> i386-pc-mingw32
>>
>> locale:
>> LC_COLLATE=Portuguese_Brazil.1252;LC_CTYPE=Portuguese_Brazil.1252;LC_MONETARY=Portuguese_Brazil.1252;LC_NUMERIC=C;LC_TIME=Portuguese_Brazil.1252
>>
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods
>> base other attached packages:
>> [1] Epi_1.0.8 R2WinBUGS_2.1-8 coda_0.13-2 lattice_0.17-8
>> MethComp_0.2.0 nlme_3.1-89 loaded via a namespace (and not attached):
>> [1] grid_2.7.0 tools_2.7.0
>> >
>>
>>
>>
>>
>>
>>
>>
>>



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