Re: [R] Error in bugs.run -- R2WinBUGS

From: Uwe Ligges <ligges_at_statistik.tu-dortmund.de>
Date: Sat, 21 Jun 2008 16:39:57 +0200

Cleber Nogueira Borges wrote:
> Hello Uwe Ligges,
> Thanks for your attention
>
> I run the code with option: debug=T, so I get the log file!
> I think that the stone in my shoe is: "educational version cannot do
> this model"...
> Am I right?

I think so, so why do you not simply get the full version of WinBUGS?

Uwe Ligges

>
> TIA
> Cleber
> --------------------------------------------------------------------------
>
> display(log)
> check(C:/Documents and Settings/cborges/Meus documentos/bugsWD/qwzx.txt)
> model is syntactically correct
> data(C:/Documents and Settings/cborges/Meus documentos/bugsWD/data.txt)
> data loaded
> compile(4)
> educational version cannot do this model
> inits(1,C:/Documents and Settings/cborges/Meus
> documentos/bugsWD/inits1.txt)
> command #Bugs:inits cannot be executed (is greyed out)
> inits(2,C:/Documents and Settings/cborges/Meus
> documentos/bugsWD/inits2.txt)
> command #Bugs:inits cannot be executed (is greyed out)
> inits(3,C:/Documents and Settings/cborges/Meus
> documentos/bugsWD/inits3.txt)
> command #Bugs:inits cannot be executed (is greyed out)
> inits(4,C:/Documents and Settings/cborges/Meus
> documentos/bugsWD/inits4.txt)
> command #Bugs:inits cannot be executed (is greyed out)
> gen.inits()
> command #Bugs:gen.inits cannot be executed (is greyed out)
> thin.updater(3)
> update(834)
> command #Bugs:update cannot be executed (is greyed out)
> set(alpha)
> command #Bugs:set cannot be executed (is greyed out)
> set(beta)
> command #Bugs:set cannot be executed (is greyed out)
> set(sigma.mi)
> command #Bugs:set cannot be executed (is greyed out)
> set(sigma.ir)
> command #Bugs:set cannot be executed (is greyed out)
> set(sigma.mir)
> command #Bugs:set cannot be executed (is greyed out)
> set(deviance)
> command #Bugs:set cannot be executed (is greyed out)
> dic.set()
> command #Bugs:dic.set cannot be executed (is greyed out)
> update(834)
> command #Bugs:update cannot be executed (is greyed out)
> coda(*,C:/Documents and Settings/cborges/Meus documentos/bugsWD/coda)
> command #Bugs:coda cannot be executed (is greyed out)
> stats(*)
> command #Bugs:stats cannot be executed (is greyed out)
> dic.stats()
>
> DIC
> history(*,C:/Documents and Settings/cborges/Meus
> documentos/bugsWD/history.odc)
> command #Bugs:history cannot be executed (is greyed out)
> save(C:/Documents and Settings/cborges/Meus documentos/bugsWD/log.odc)
> save(C:/Documents and Settings/cborges/Meus documentos/bugsWD/log.txt)
>
>
>
>
>
>

>> Yes: Please do what the error message tells you to do.
>>
>> Uwe Ligges
>>
>> Cleber Nogueira Borges wrote:
>>>
>>> Hi,
>>>
>>> I tried to use MethComp library and this library make use of the 
>>> WinBUGS by R2WinBuGUS,
>>> but I get the follow error in bugs.run:
>>>
>>> *Error in bugs.run(n.burnin, bugs.directory, WINE = WINE, useWINE = 
>>> useWINE,  : *
>>>  Look at the log file and
>>> try again with 'debug=TRUE' to figure out what went wrong within Bugs.
>>>
>>> Anyone can help-me, please?
>>> Thanks
>>>
>>> Cleber
>>>
>>>
>>>
>>> library( MethComp )
>>> library( R2WinBUGS )
>>> library( Epi )
>>> # source("c:/stat/r/bxc/library.sources/methcomp/r/tab.repl.r")
>>> # source("c:/stat/r/bxc/library.sources/methcomp/r/MCx.r")
>>> # The oximetry example
>>> #------------------------------------------------------------------------------- 
>>>
>>> # First the full story
>>> data( ox )
>>> str( ox )
>>> tab.repl( ox )
>>> *options( bugs.directory="c:/R/WinBUGS14/")*
>>> ( ox.mi.ir <- MethComp( ox, n.iter=5000 ) )
>>> Comparison of 2 methods, using 354 measurements
>>> on 61 items, with up to 3 replicate measurements,
>>> (with the values in the set: 1 2 3 )
>>> ( 2 * 61 * 3 = 366 ):
>>>
>>> No. items with measurements on each method:
>>>
>>> Simulation run of a model with
>>> - method by item and item by replicate interaction:
>>> - using 4 chains run for 5000 iterations
>>>  (of which 2500 are burn-in),
>>> - monitoring every 3 values of the chain:
>>> - giving a posterior sample of 3333 observations.
>>>
>>> *Error in bugs.run(n.burnin, bugs.directory, WINE = WINE, useWINE = 
>>> useWINE,  : *
>>>  Look at the log file and
>>> try again with 'debug=TRUE' to figure out what went wrong within Bugs.
>>> In addition: Warning message:
>>> In pt(q, df, lower.tail, log.p) : NaNs produced
>>>  >
>>>
>>>
>>>  > sessionInfo()
>>> R version 2.7.0 (2008-04-22)
>>> i386-pc-mingw32
>>>
>>> locale:
>>> LC_COLLATE=Portuguese_Brazil.1252;LC_CTYPE=Portuguese_Brazil.1252;LC_MONETARY=Portuguese_Brazil.1252;LC_NUMERIC=C;LC_TIME=Portuguese_Brazil.1252 
>>>
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods   
>>> base   other attached packages:
>>> [1] Epi_1.0.8       R2WinBUGS_2.1-8 coda_0.13-2     lattice_0.17-8  
>>> MethComp_0.2.0  nlme_3.1-89  loaded via a namespace (and not attached):
>>> [1] grid_2.7.0  tools_2.7.0
>>>  >
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>

>
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