[R] Rmpi unkown input format error

From: Lyman, Mark <Mark.Lyman_at_atk.com>
Date: Thu, 10 Jul 2008 11:11:45 -0600


I have just installed Rmpi on a Suse 9.1 linux cluster with openmpi-1.0.1. I am trying the example included below from the tutorial website. However, I keep getting the following error:  

> # Load the R MPI package if it is not already loaded.

> if (!is.loaded("mpi_initialize")) {

+ library("Rmpi")

+ }

>
  

> # Spawn as many slaves as possible

> mpi.spawn.Rslaves(nslaves=4)

                4 slaves are spawned successfully. 0 failed.

Error in unserialize(obj) : unknown input format

Calls: mpi.spawn.Rslaves ... mpi.bcast.Robj -> .mpi.unserialize -> unserialize -

> .Call

Execution halted    

# Load the R MPI package if it is not already loaded.

if (!is.loaded("mpi_initialize")) {

    library("Rmpi")

    }  

# Spawn as many slaves as possible

mpi.spawn.Rslaves(nslaves=4)  

# In case R exits unexpectedly, have it automatically clean up

# resources taken up by Rmpi (slaves, memory, etc...)

.Last <- function(){

    if (is.loaded("mpi_initialize")){

        if (mpi.comm.size(1) > 0){

            print("Please use mpi.close.Rslaves() to close slaves.")

            mpi.close.Rslaves()

        }

        print("Please use mpi.quit() to quit R")

        .Call("mpi_finalize")

    }

}  

# Tell all slaves to return a message identifying themselves

mpi.remote.exec(paste("I am",mpi.comm.rank(),"of",mpi.comm.size()))  

# Tell all slaves to close down, and exit the program

mpi.close.Rslaves()

mpi.quit()  

Mark Lyman, Statistician

ATK Launch Systems

mark.lyman_at_atk.com <mailto:mark.lyman_at_atk.com>

(435) 863-2863

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