Re: [R] network

From: Gabor Csardi <csardi_at_rmki.kfki.hu>
Date: Fri, 11 Jul 2008 08:33:17 -0500

I'm sure this is possible with 'network', but i'm not very familiar with that package. In case you don't get an answer on how to do it with network, here is how to do it with the 'igraph' package:

library(igraph)
M <- matrix(runif(100)*2-1, 10, 10)
M[ lower.tri(M, diag=TRUE) ] <- 0

M[ abs(M) < 0.5] <- 0

g <- graph.adjacency(M, weighted=TRUE, mode="upper") E(g)$color <- "green"
E(g)[ weight<0 ]$color <- "red"

g$layout <- layout.fruchterman.reingold
plot(g)

Please tell me if something is not clear, Gabor

On Fri, Jul 11, 2008 at 02:04:54PM +0100, Dry, Jonathan R wrote:
> Hello
>
> I am a relatively new user of R and am struggling to use the 'network' package. I have a correlation matrix (produced using 'cor'), and want to draw a network where each item showing correlation above a threshold (say 0.5) is joined by a green line, and each item showing correlation below a threshold (say -0.5) is joined by a red line. Does anyone have any hints of how to correctly use functions within the 'network' package to achieve this?
>
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-- 
Csardi Gabor <csardi_at_rmki.kfki.hu>    UNIL DGM

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Received on Fri 11 Jul 2008 - 13:40:33 GMT

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