[R] copy number estimation through oligo package?

From: Yupu Liang <liang_at_cbio.mskcc.org>
Date: Fri, 18 Jul 2008 13:52:55 -0400


I am new to the copy number analysis and i am trying to do the estimation through affymetrix's 6.0 snp array through oligo package.

The problem is I couldn't find the method that actually does the analysis, even though there is a data object that hold the results:

Am I missing something? Or the crlmm does the copy number too(as my understanding it just makes genotype calls).

Or should I use other package(?) to do the analysis?


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