Re: [R] Plink bed files

From: Robert Gentleman <rgentlem_at_fhcrc.org>
Date: Fri, 25 Jul 2008 06:50:22 -0700

Hi Frederico,

   You will likely have more luck asking about Bioinformatics related questions on the Bioconductor list,

you might look at the rtracklayer package which can import bed files, if they really are bed files, and otherwise you would have to get the file format and write your own parser.

Robert

Federico Calboli wrote:
> Hi All,
>
> does anyone know how to import binary .bed files generated by Plink (http://pngu.mgh.harvard.edu/~purcell/plink/
> ) into R? the Plink FAQ explains how to conver other types of files,
> not the .bed.
>
> Cheers,
>
> Federico
>
>
> --
> Federico C. F. Calboli
> Department of Epidemiology and Public Health
> Imperial College, St. Mary's Campus
> Norfolk Place, London W2 1PG
>
> Tel +44 (0)20 75941602 Fax +44 (0)20 75943193
>
> f.calboli [.a.t] imperial.ac.uk
> f.calboli [.a.t] gmail.com
>
>
>
>
> [[alternative HTML version deleted]]
>
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem_at_fhcrc.org

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Received on Fri 25 Jul 2008 - 13:54:28 GMT

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