Re: [Rd] Problem compiling R library on FC4 ( conflicting declaration in Rinterface.h and stdint.h)

From: Marc Schwartz <marc_schwartz_at_me.com>
Date: Sat, 26 Dec 2009 17:53:02 -0600

FC4? Really?

That has not been supported in over 3 years.

The only versions of Fedora currently supported are 11 and 12. You need to get that machine updated.

My vague recollection was that there were a variety of fortran compiler issues around that time (circa 2005/2006) with FC4, though I could not locate anything specific regarding the error message you are observing.

Get your computer updated to a current version of Fedora, if that is the Linux distribution you wish to stay with. Trying to debug compiler problems on a Linux distribution that itself has not been supported in a long time is asking for trouble.

Marc Schwartz

On Dec 26, 2009, at 3:41 PM, Saptarshi Guha wrote:

> Hello,
> The package builds successfully on RHEL5 and OS X( 64 bit,32/64
> respectively) but on FC4(32 bit) it fails with this error
>
> g++ -m32 -I/usr/include/R -I/usr/local/include -fpic -O2 -g -pipe
> -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -I. -g `pkg-config --cflags protobuf`
> -Wall -c display.cc -o display.o
>
> /usr/include/R/Rinterface.h:84: error: conflicting declaration
> 'typedef long unsigned int uintptr_t'
> /usr/include/stdint.h:129: error: 'uintptr_t' has a previous
> declaration as 'typedef unsigned int uintptr_t'
>
>
> display.cc includes a header file ream.h which has
>
> #ifndef __ream_h
> #define __ream_h
>
> #include <iostream>
> #include <google/protobuf/stubs/common.h>
>
> #include <rexp.pb.h>
> #include <stdint.h> //commenting this does not make a difference
> #include <sys/types.h>
> #include <sys/time.h>
> #include <time.h>
> #include <errno.h>
> #include <fcntl.h>
> #include <signal.h>
> #include <stdio.h>
> #include <stdlib.h>
> #include <string.h>
> #include <unistd.h>
> #include <sys/wait.h>
>
> #define R_NO_REMAP
> #define R_INTERFACE_PTRS 1
> #define CSTACK_DEFNS 1
>
> #include <Rversion.h>
> #include <R.h>
> #include <Rdefines.h>
>
> #include <Rinterface.h>
> #include <Rembedded.h>
> #include <R_ext/Boolean.h>
> #include <R_ext/Parse.h>
> #include <R_ext/Rdynload.h>
>
>
> Thanks
> Saptarshi
>
> ______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Sat 26 Dec 2009 - 23:58:15 GMT

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