Re: [R] rma and gcrma do not work in R 1.9.0

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From: A.J. Rossini (rossini@blindglobe.net)
Date: Fri 14 May 2004 - 23:34:57 EST


Message-id: <853c63rv26.fsf@servant.blindglobe.net>


This is a bioconductor issue, and better suited for that list.

"Li, James [PRDUS Non-J&J]" <JLi2@prdus.jnj.com> writes:

> I run R 1.9.0 on windows 2000, and have the following libraries installed:
>
> affydata_1.3.1
> affy_1.4.23
> Biobase_1.4.10
> DynDoc_1.3.14
> gcrma_1.0.6
> hgu133acdf_1.4.3
> hgu95av2cdf_1.4.3
> hgu95av2probe_1.0
> matchprobes_1.0.7
> moe430acdf_1.4.3
> multcomp_0.4-6
> mvtnorm_0.6-6
> rae230acdf_1.4.3
> reposTools_1.3.29
> rgu34acdf_1.4.3
> tkWidgets_1.5.1
> widgetTools_1.2.7
>
> 1. The rma function (in affy library) always crashes.
> 2. When executing the sample code in gcrma function's document, the
> following error occures:
> Loading required package: matchprobes
> Error in f(libname, pkgname) : couldn't find function
> "addVigs2WinMenu"
>
> Does any one known any quick fix or workaround?
>
> James
>
>
> [[alternative HTML version deleted]]
>
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>

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Biomedical and Health Informatics   University of Washington
Biostatistics, SCHARP/HVTN          Fred Hutchinson Cancer Research Center
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