Re: [R] prcomp help

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From: Al Piszcz (apiszcz@solarrain.com)
Date: Mon 31 May 2004 - 06:27:39 EST


Message-id: <Pine.LNX.4.60.0405301627090.1941@l1>


There may be some compilation issues with XFree86 4.4.0

gcc -Wl,--export-dynamic -L/usr/local/lib -o R.bin CConverters.o Rdynload.o RN
G.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o charac
ter.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o dat
etime.o debug.o devPS.o devPicTeX.o deparse.o deriv.o devices.o dotcode.o dounz
ip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o
gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o
logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o opti
mize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o pri
nt.o printarray.o printvector.o printutils.o qsort.o random.o regex.o relop.o s
aveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o sub
assign.o subscript.o subset.o summary.o unique.o util.o version.o vfonts.o regi
stration.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -L
/usr/local/lib -L/a/app/gcc-3.4.0/bin/../lib/gcc/i686-pc-linux-gnu/3.4.0 -L/a/a
pp/gcc-3.4.0/bin/../lib/gcc -L/vapp/lib -L/app/gcc-3.4.0/lib/gcc/i686-pc-linux-
gnu/3.4.0 -L/a/app/gcc-3.4.0/bin/../lib/gcc/i686-pc-linux-gnu/3.4.0/../../.. -L
/app/gcc-3.4.0/lib/gcc/i686-pc-linux-gnu/3.4.0/../../.. -lfrtbegin -lg2c -lm -l
gcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lr
eadline -ldl -lncurses -lm
make[4]: Entering directory `/x/r/R-1.9.0/src/main'
make[4]: Leaving directory `/x/r/R-1.9.0/src/main'
make[3]: Leaving directory `/x/r/R-1.9.0/src/main'
make[2]: Leaving directory `/x/r/R-1.9.0/src/main'
make[2]: Entering directory `/x/r/R-1.9.0/src/modules'
make[3]: Entering directory `/x/r/R-1.9.0/src/modules/X11'
make[4]: Entering directory `/x/r/R-1.9.0/src/modules/X11'
making dataentry.d from dataentry.c
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Leaving directory `/x/r/R-1.9.0/src/modules/X11'
make[4]: Entering directory `/x/r/R-1.9.0/src/modules/X11'
gcc -I. -I../../../src/include -I../../../src/include -I/usr/X11R6/include -I/u
sr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c
  dataentry.c -o dataentry.lo
In file included from dataentry.c:31:
/usr/include/X11/Xlib.h:1390: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1478: error: parse error before "char"
/usr/include/X11/Xlib.h:1506: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1510: error: parse error before "char"
/usr/include/X11/Xlib.h:1532: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1567: error: parse error before '*' token
/usr/include/X11/Xlib.h:1576: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1601: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1651: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1657: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1704: error: parse error before "char"
/usr/include/X11/Xlib.h:1743: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:1984: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2068: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2321: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2331: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2403: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2413: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2571: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2586: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2779: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2846: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2851: error: parse error before "char"
/usr/include/X11/Xlib.h:2965: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:2991: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3002: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3027: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3036: error: parse error before "char"
/usr/include/X11/Xlib.h:3049: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3192: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3241: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3273: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3364: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3371: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3391: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3397: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3409: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3419: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3429: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3435: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3536: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3553: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3604: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3647: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3653: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3659: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3665: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3673: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3681: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3689: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3701: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3713: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3760: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3771: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3782: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3793: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3804: error: parse error before "_Xconst"
/usr/include/X11/Xlib.h:3815: error: parse error before "_Xconst"
In file included from dataentry.c:32:
/usr/include/X11/Xutil.h:566: error: parse error before "_Xconst"
/usr/include/X11/Xutil.h:606: error: parse error before "_Xconst"
/usr/include/X11/Xutil.h:666: error: parse error before "_Xconst"
/usr/include/X11/Xutil.h:678: error: parse error before "_Xconst"
/usr/include/X11/Xutil.h:801: error: parse error before "_Xconst"
dataentry.c: In function `GetKey':
dataentry.c:1272: warning: passing arg 4 of `XLookupString' from incompatible p
ointer type
dataentry.c: In function `GetCharP':
dataentry.c:1281: warning: passing arg 4 of `XLookupString' from incompatible p
ointer type
dataentry.c: In function `doControl':
dataentry.c:1302: warning: passing arg 4 of `XLookupString' from incompatible p
ointer type
make[4]: *** [dataentry.lo] Error 1
make[4]: Leaving directory `/x/r/R-1.9.0/src/modules/X11'
make[3]: *** [R] Error 2
make[3]: Leaving directory `/x/r/R-1.9.0/src/modules/X11'
make[2]: *** [R] Error 1
make[2]: Leaving directory `/x/r/R-1.9.0/src/modules'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/x/r/R-1.9.0/src'
make: *** [R] Error 1

real 6m23.270s
user 1m35.338s
sys 0m8.069s

On Sun, 30 May 2004, Uwe Ligges wrote:

> Date: Sun, 30 May 2004 22:01:58 +0200
> From: Uwe Ligges <ligges@statistik.uni-dortmund.de>
> To: Al Piszcz <apiszcz@solarrain.com>
> Cc: r-help@stat.math.ethz.ch
> Subject: Re: [R] prcomp help
>
> Al Piszcz wrote:
>>
>> Slackware 9.1, R 1.9.0, 2.54GHZ P4, 2GB RAM
>>
>> example(prcomp) never finishes
>>
>>
>>> example(prcomp)
>>
>>
>> prcomp> data(USArrests)
>>
>> prcomp> prcomp(USArrests)
>>
>>
>> ====
>>
>> The following test also appears to hang.
>>
>>> a<-matrix(rnorm(100,mean=32,sd=31),10,10)
>>> b<-prcomp(a)
>
> Works on Windows and several other OSs.
>
> Do you have a local copy of prcomp() (which is different from the original
> one)?
>
> What happens if you start R with --vanilla and try again?
>
> What happened after
> make check
> during your R installation? make check should have reported an error here (or
> hang itself)....
>
> Uwe Ligges
>
>
>
>
>>
>>
>>
>> ====
>>
>> What is the recommended debug approach?
>>
>> Thank you.
>>
>> ______________________________________________
>> R-help@stat.math.ethz.ch mailing list
>> https://www.stat.math.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide!
>> http://www.R-project.org/posting-guide.html
>

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