RE: [R] Errors during make check

From: Andrew K Helyer <ahelyer_at_austin.utexas.edu>
Date: Fri 29 Oct 2004 - 07:26:19 EST


Thank you for your help. I'm really stumped on this one.

Here is some information from the end of the configuration step...

R is now configured for sparc-sun-solaris2.9

  Source directory: .
  Installation directory: /usr/local

  C compiler:                gcc  -g -O2
  C++ compiler:              g++  -g -O2
  Fortran compiler:          f77  -g

  Interfaces supported:      X11, tcltk
  External libraries:        
  Additional capabilities:   PNG, JPEG
  Options enabled:           R profiling

  Recommended packages:      yes 



The ...Ex.Rout.fail file contains:

R : Copyright 2004, The R Foundation for Statistical Computing Version 2.0.0 (2004-10-04), ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for a HTML browser interface to help. Type 'q()' to quit R.

> ### * <HEADER>
> ###
> attach(NULL, name = "CheckExEnv")
> assign(".CheckExEnv", as.environment(2), pos = length(search())) #
base
> ## add some hooks to label plot pages for base and grid graphics
> setHook("plot.new", ".newplot.hook")
> setHook("persp", ".newplot.hook")
> setHook("grid.newpage", ".gridplot.hook")
>
> assign("cleanEx",

+        function(env = .GlobalEnv) {
+          rm(list = ls(envir = env, all.names = TRUE), envir = env)
+            RNGkind("default", "default")
+          set.seed(1)
+          options(warn = 1)
+          assign("T", delay(stop("T used instead of TRUE")),
+                 pos = .CheckExEnv)
+          assign("F", delay(stop("F used instead of FALSE")),
+                 pos = .CheckExEnv)
+          sch <- search()
+          newitems <- sch[! sch %in% .oldSearch]
+          for(item in rev(newitems))
+                eval(substitute(detach(item), list(item=item)))
+          missitems <- .oldSearch[! .oldSearch %in% sch]
+          if(length(missitems))
+              warning("items ", paste(missitems, collapse=", "),
+                      " have been removed from the search path")
+        },
+        env = .CheckExEnv)

> assign("..nameEx", "__{must remake R-ex/*.R}__", env = .CheckExEnv) #
for now
> assign("ptime", proc.time(), env = .CheckExEnv)
> grDevices::postscript("base-Examples.ps")
> assign("par.postscript", graphics::par(no.readonly = TRUE), env =
.CheckExEnv)
> options(contrasts = c(unordered = "contr.treatment", ordered =
"contr.poly"))
> assign(".oldSearch", search(), env = .CheckExEnv)
> assign(".oldNS", loadedNamespaces(), env = .CheckExEnv)
> cleanEx(); ..nameEx <- "Arithmetic"
>
> ### * Arithmetic
>
> flush(stderr()); flush(stdout())
>
> ### Name: Arithmetic
> ### Title: Arithmetic Operators
> ### Aliases: + - * / ^ \%\% \%/\% Arithmetic
> ### Keywords: arith
>
> ### ** Examples
>
> x <- -1:12
> x + 1

 [1] 0 1 2 3 4 5 6 7 8 9 10 11 12 13
> 2 * x + 3

 [1] 1 3 5 7 9 11 13 15 17 19 21 23 25 27
> x %% 2 #-- is periodic

 [1] 1 0 1 0 1 0 1 0 1 0 1 0 1 0
> x %/% 5

 [1] -1 0 0 0 0 0 1 1 1 1 1 2 2 2
>
>
>
> cleanEx(); ..nameEx <- "Bessel"
>
> ### * Bessel
>
> flush(stderr()); flush(stdout())

> -----Original Message-----
> From: Prof Brian Ripley [mailto:ripley@stats.ox.ac.uk]
> Sent: Thursday, October 28, 2004 3:34 PM
> To: Andrew K Helyer
> Cc: r-help@stat.math.ethz.ch
> Subject: Re: [R] Errors during make check
>
> On Thu, 28 Oct 2004, Andrew K Helyer wrote:
>
> > On a SUN 280R running Solaris 9...
>
> Compilers? Optimization settings? 32- or 64-bit?
>
> > The configure and make steps completed without errors. But
> when I try to
> > perform the make check step, I get the following:
> >
> >
> > $ make check FORCE=FORCE
> > `Makedeps' is up to date.
> > running code in 'base-Ex.R' ...*** Error code 1
> > make: Fatal error: Command failed for target `base-Ex.Rout'
> > Current working directory /usr/local/R-2.0.0/tests/Examples
>
> Please take a look at the file that failed, probably
> tests/Examples/base-Ex.Rout.fail. If that is not there, look
> for a core
> dump in tests/Examples.
>
> > I don't know what to make of these. I've tried several
> options on the
> > configure step (static libs, pointing to tclConfig.sh and
> tkConfig.sh,
> > etc). I've reviewed the FAQs and mailing list archives.
> I've read and
> > reread the install instructions.
> >
> > Can anyone give me some more clues about what I'm missing?
>
> --
> Brian D. Ripley, ripley@stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
>
>



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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Fri Oct 29 07:40:28 2004

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