RE: [R] R CMD check doesn't stop with checking examples

From: Liaw, Andy <andy_liaw_at_merck.com>
Date: Sun 24 Apr 2005 - 22:36:30 EST


One suggestion: After you break the check process, look at the file

C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R

and try to see if you can run that in batch mode.

Andy

> From: Gorjanc Gregor
>
> Hello!
>
> I am building a package, which includes also one Fortran subroutine,
> which works fine if I compile it as a shared library and load it into
> R via dyn.load(). However, when I launch R CMD check it doesn't stop
> with checking examples. It's just doing and doing ... I pasted the
> whole output from R CMD check. Does anyone have any suggestions?
>
> I'm still using R 2.0.1.
>
> C:\Gregor\devel\GeneticsPed>Rcmd check GeneticsPed
> * checking for working latex ... OK
> * using log directory 'C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck'
> * checking for file 'GeneticsPed/DESCRIPTION' ... OK
> * checking if this is a source package ... OK
>
> installing R.css in C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck
>
>
> ---------- Making package GeneticsPed ------------
> adding build stamp to DESCRIPTION
> installing NAMESPACE file and metadata
> making DLL ...
> g77 -O2 -Wall -c meuwissen.f -o meuwissen.o
> ar cr GeneticsPed.a meuwissen.o
> ranlib GeneticsPed.a
> gcc --shared -s -o GeneticsPed.dll GeneticsPed.def
> GeneticsPed.a GeneticsPed_r
> es.o -Lc:/Programs/R/rw2001/src/gnuwin32 -lg2c -lR
> ... DLL made
> installing DLL
> installing R files
> installing man source files
> installing indices
> installing help
> >>> Building/Updating help pages for package 'GeneticsPed'
> Formats: text html latex example chm
> NAtoUnknown text html latex example
> code.pedigree text html latex example
> extend.pedigree text html latex example
> generate.pedigree text html latex example
> generation text html latex example
> getcode.pedigree text html latex example
> inbreeding text html latex
> example chm
> is.unknown text html latex example
> kinship text html latex
> example chm
> pedigree text html latex
> example chm
> missing link(s): ?pedigree in kinship?
> prop.pedigree text html latex example
> relationshipAdditive text html latex
> example chm
> Microsoft HTML Help Compiler 4.74.8702
>
> Compiling c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm
>
>
> Compile time: 0 minutes, 0 seconds
> 13 Topics
> 41 Local links
> 0 Internet links
> 1 Graphic
>
>
> Created
> c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm,
> 32,327 byte
> s
> Compression decreased file by 10,172 bytes.
> adding MD5 sums
>
> * DONE (GeneticsPed)
>
> * checking package directory ... OK
> * checking for portable file names ... OK
> * checking package dependencies ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for syntax errors ... OK
> * checking R files for library.dynam ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking Rd files ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking for CRLF line endings in C sources/headers ... OK
> * creating GeneticsPed-Ex.R ... OK
> * checking examples ...
>
> --
> Lep pozdrav / With regards,
> Gregor Gorjanc
>
> --------------------------------------------------------------
> ----------
> University of Ljubljana
> Biotechnical Faculty URI: http://www.bfro.uni-lj.si/MR/ggorjan
> Zootechnical Department email: gregor.gorjanc <at> bfro.uni-lj.si
> Groblje 3 tel: +386 (0)1 72 17 861
> SI-1230 Domzale fax: +386 (0)1 72 17 888
> Slovenia
>
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>
>



R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Sun Apr 24 22:41:12 2005

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