Re: [R] vector vs array

From: Adaikalavan Ramasamy <ramasamy_at_cancer.org.uk>
Date: Tue 09 Aug 2005 - 03:57:51 EST

General Notes :
a) Please try to give a simple example
b) Please avoid the rightwards assignment (i.e. "->"). Eventhough it is perfectly legal to use it, it is confusing especially when you are posting to a mailing list.

  1. Here is a reproducible example
 set.seed(1)                         # for reproducibility
 v <- abs( rnorm(1000) )
 thr <- c( 0.5, 1.0, 2.0, 3.0 )

2) If you simply want to count the number of points above a threshold

 sapply( thr, function(x) sum(v > x) )
 [1] 620 326 60 3

3) Or you can cut the data by threshold limits (be careful at the edges if you have discrete data) followed by breaks

 table( cut( v, breaks=c( -Inf, thr, Inf ) ) ) )

 (-Inf,0.5]    (0.5,1]      (1,2]      (2,3]    (3,Inf]
        380        294        266         57          3

 

4) If you want to turn the problem on its head and ask for which threshold point would you get 99%, 99.9% and 99.99% of the data below it, you can use use quantiles

 quantile( v, c(0.99, 0.999, 0.9999) )

      99% 99.9% 99.99%
 2.529139 3.056497 3.734899

Regards, Adai

On Mon, 2005-08-08 at 08:34 -0700, alessandro carletti wrote:
> Hi!
> OK, I'm trying to select some "useful outliers" from
> my dataset: I defined 11 "treshold" values (1 for each
> level of a variable (sampling site) as follows:
>
>
> tresholds<-function(x)
> {
> tapply(x,mm$NAME,FUN=mean ,simplify = T, na.rm=T)->med
>
>
> tapply(x,mm$NAME,FUN=sd ,simplify = T,
> na.rm=T)->standev
>
> standev+med
>
> }
> tresholds(mm$chl)
>
>
> Now I'd like to select those values from vector mm$chl
> that are higher than each "treshold value", but how
> can I compare a vector with 1885 elements with the one
> with 11?
> Sorry for this (probably) stupid question...
> and thanks in advance.
> Alessandro
>
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>



R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Tue Aug 09 04:01:27 2005

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