Re: [R] repeated - R package - Compilation Error

From: <rab45+_at_pitt.edu>
Date: Thu 11 Aug 2005 - 22:48:05 EST

> On Wed, 10 Aug 2005 rab45+@pitt.edu wrote:
>
>> Thompson's Manual to Accompany Agresti's book refers to a package named
>> "repeated". It's not on CRAN from what I can see. I have seen rpm's for
>> it. Where is the best place to download this package?
>
> See the FAQ, Q5.1.5.  As to the `best' place, it is hard to say as the URI
> keeps changing: currently it seems to be
> http://popgen.unimaas.nl/~jlindsey/rcode.html.
>
> --
> Brian D. Ripley,                  ripley@stats.ox.ac.uk
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>

I downloaded from the site you suggested but I get an error when installing:

drwxr-xr-x 5 root root 4096 Apr 25 2003 repeated
-rw-rw-r-- 1 chippy chippy 176563 Aug 10 17:05 repeated.tgz
[root@ophth-bilora R]# man R
[root@ophth-bilora R]# R CMD INSTALL repeated * Installing *source* package 'repeated' ... ** libs
gfortran -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c chidden.f -o
chidden.o
gfortran -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c cphidden.f -o
cphidden.o
gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c cutil.c -o cutil.o
gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c dist.c -o dist.o
gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c gar.c -o gar.o
gfortran -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c hidden.f -o
hidden.o
gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c kcountb.c -o kcountb.o
gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c kserieb.c -o kserieb.o
gfortran -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c logitord.f -o
logitord.o
gfortran -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c binnest.f -o
binnest.o
 In file binnest.f:638

             Gradient(t1+t2+kk) = Gradient(t1+t2+kk) + (D1_Sig2(kk) / Li
                                                                       1
Error: Expected a right parenthesis in expression at (1) make: *** [binnest.o] Error 1
ERROR: compilation failed for package 'repeated'

I guess I can go in and fix this and try re-compiling.

Rick B.



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