[R] Compilation failures: mgcv, spatstat, Matrix, cluster

From: Michael Kubovy <kubovy_at_virginia.edu>
Date: Sun 14 Aug 2005 - 04:14:28 EST

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With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X 10.4.2 (8C46):

Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some don't, e.g., mgcv, spatstat, and the following (Matrix, cluster):

trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ Matrix_0.98-3.tar.gz'
Content type 'application/x-tar' length 626712 bytes opened URL

downloaded 612Kb

The downloaded packages are in

     /private/tmp/RtmpPddsAE/downloaded_packages gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -I./Metis -fno-common -g -O2 -c HBMM.c -o HBMM.o
In file included from HBMM.c:2:
iohb.h:6:19: malloc.h: No such file or directory make: *** [HBMM.o] Error 1
ERROR: compilation failed for package 'Matrix'

trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ cluster_1.10.1.tar.gz'
Content type 'application/x-tar' length 190975 bytes opened URL

downloaded 186Kb

The downloaded packages are in

     /private/tmp/RtmpPddsAE/downloaded_packages gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib - o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 -lg2c -lSystem -framework R
** Removing '/Library/Frameworks/R.framework/Versions/2.1.1/Resources/
** Restoring previous '/Library/Frameworks/R.framework/Versions/2.1.1/
ld: clara.o has external relocation entries in non-writable section (__TEXT,__text) for symbols:
make: *** [cluster.so] Error 1
ERROR: compilation failed for package 'cluster'

Professor Michael Kubovy
University of Virginia
Department of Psychology
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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Sun Aug 14 04:21:26 2005

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