[R] some thoughts on outlier detection, need help!

From: Weiwei Shi <helprhelp_at_gmail.com>
Date: Fri 05 Aug 2005 - 05:13:14 EST


Dear listers:
I have an idea to do the outlier detection and I need to use R to implement it first. Here I hope I can get some input from all the guru's here.

I select distance-based approach---
step 1:
calculate the distance of any two rows for a dataframe. considering the scaling among different variables, I choose mahalanobis, using variance as scaler.

step 2:
Let k be the number of points in one "cluster". K is decided by answering the following question: how many neighbors a point needs for not being an outlier.

for each point, get the smallest (k-1) distances from step1. Among the (k-1) distances of each point, get the max for the point.

step 3:
get the distribution of those max for all the points. Thus, the multivariate problem becomes a univariate one. Then the outlier in those max's will define the outlier of the point.

My question is:
1. I don't know if using mahalanobis is proper or not since most clustering algorithms implemented in R (like pam or clara) use euclidean or mahattan.
2. Is there a way to get the mahalanobis distance matrix for any two rows of a dataframe or matrix?
3. My approach does allow a point belonging to more than one k-cluster. Is there similar algorithm in R or published?

Thanks for any suggestions,

weiwei

-- 
Weiwei Shi, Ph.D


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Received on Fri Aug 05 05:34:27 2005

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