Re: [R] R-help Digest, Vol 30, Issue 6

From: David Duffy <David.Duffy_at_qimr.edu.au>
Date: Mon 08 Aug 2005 - 16:22:40 EST

On Fri, 5 Aug 2005 Julia Reid wrote:

> Subject: [R] GAP pointer
>
> I am trying to do a simple segregation analysis using the GAP package. I
> have the documentation for pointer but I desperately need an example so
> that I can see how to format the datfile and the jobfile. For each
> individual, I have FamilyId, SubjectId, FatherId, MotherId, and
> AffectedStatus (0/1). I would like to obtain the likelihood ratio
> statistic for transmission.
> I would greatly appreciate any help on this subject.
> Best to all,
> Julia Reid
>
I wouldn't use Pointer myself (there are lots of more recent packages*), but look at the examples in
http://cedar.genetics.soton.ac.uk/pub/PROGRAMS/pointer/pointer.tar.Z and the manual, which is in the book:

Morton N.E., Rao D.C & Lalouel J-M (1983). Methods in Genetic Epidemiology. Karger
PO Box, CH-4009 Basel (Switzerland).
ISBN 3-8055-3668-2 which you will find in many academic libraries.

David Duffy.


R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Mon Aug 08 16:35:20 2005

This archive was generated by hypermail 2.1.8 : Sun 23 Oct 2005 - 15:08:18 EST