[R] Clustering and bootstrap

From: David Duffy <David.Duffy_at_qimr.edu.au>
Date: Fri 23 Sep 2005 - 13:04:53 EST

> From: Eric Pante <ericpante@hotmail.com>
>
> Dear Listers,
>
> I emailed the list a few days ago about how to bootstrap a community
> matrix (species by sites) and get a consensus tree with node support. A
> friend pointed out that a similar question remained unanswered in 2004.
> I wish to re-word my question: is anyone aware of a package / method to
> obtain a majority-rule consensus tree from x distance matrices ? Is
> anyone using R to generate phylogenetic trees with node support ?
>

This is not (currently ;)) an R solution nor bootstrapping, instead using a pretty general reversible-jump type Gibbs sampler (see P 11 onward and refs)

http://eprint.uq.edu.au/archive/00001138/



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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Fri Sep 23 13:24:05 2005

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