Re: [R] Error in "make check-all"

From: Fernando Mayer <fernandomayer_at_gmail.com>
Date: Wed 28 Sep 2005 - 02:22:45 EST

Dear Prof. Ripley, that was exactly what i did. Should i login on the system as root, instead of login as user and became root via console? What should i do to have X11 usable?

Thanks,
Fernando Mayer.

Prof Brian Ripley escreveu:

>This is what happens if you don't have a usable X11 display. Did you
>perhaps use a root account on a console owned by a normal user?
>
>On Tue, 27 Sep 2005, Fernando Mayer wrote:
>
>
>
>>Dear R-users,
>>
>>i'm a very newbie in linux, but decided to build R from source.
>>Following the "R Installation and Administration" manual, i did this:
>>
>>./configure --enable-R-shlib # this option is here because i intend to
>>build the GNOME console after...
>>make
>>make check
>>
>>no problems in make check, but:
>>
>>make check-devel #and also
>>make check-all
>>
>>indicated some WARNINGs in the log file:
>>
>>/usr/local/R-2.1.1/tests/tcltk.Rcheck/00check.Rcheck
>>
>>Right below is the content of this log file (I translated some words):
>>
>>[start log file]
>>
>>* using log directory '/usr/local/R-2.1.1/tests/tcltk.Rcheck'
>>* using R version 2.1.1, 2005-06-20
>>* looks like 'tcltk' is a base package
>>* skipping installation test
>>* checking package directory ... OK
>>* checking for portable file names ... OK
>>* checking for sufficient/correct file permissions ... OK
>>* checking DESCRIPTION meta-information ... OK
>>* checking package dependencies ... OK
>>* checking index information ... OK
>>* checking package subdirectories ... OK
>>* checking S3 generic/method consistency ... WARNING
>>Erro: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>See section 'Generic functions and methods' of the 'Writing R Extensions'
>>manual.
>>* checking replacement functions ... WARNING
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>In R, the argument of a replacement function which corresponds to the right
>>hand side must be named 'value'.
>>* checking foreign function calls ... WARNING
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>See section 'System and foreign language interfaces' of the 'Writing R
>>Extensions' manual.
>>* checking Rd files ... OK
>>* checking for missing documentation entries ... WARNING
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>All user-level objects in a package should have documentation entries.
>>See chapter 'Writing R documentation files' in manual 'Writing R
>>Extensions'.
>>* checking for code/documentation mismatches ... WARNING
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>Error: .First.lib failed for 'tcltk'
>>Call sequence:
>>2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>>1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
>>FALSE)
>>Interrupted execution
>>* checking Rd \usage sections ... OK
>>* checking DVI version of manual ... OK
>>
>>[end log file]
>>
>>The problem is in the tcltk package. I have searched in the archives,
>>but didin't find anything similar to this problem (maybe there is, but i
>>was not able to identify it). I really don't know what all the warnings
>>means. What i need to know is what am i missing, and if there is
>>something i can fix it. Also, are there any problems if i continue the
>>installation without fix something?
>>
>>P.S.: actually R is running already from where it was buit, but i want
>>to install it. So i want to avoid future problems, if this warnings
>>really make some.
>>
>>Any help is appreciated. Thanks!
>>
>>Fernando Mayer.
>>
>>version
>> _
>>platform i686-pc-linux-gnu
>>arch i686
>>os linux-gnu [SuSE 9.3]
>>system i686, linux-gnu
>>status
>>major 2
>>minor 1.1
>>year 2005
>>month 06
>>day 20
>>language R
>>
>>
>> [[alternative HTML version deleted]]
>>
>>______________________________________________
>>R-help@stat.math.ethz.ch mailing list
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
>>
>>
>>
>
>
>

        [[alternative HTML version deleted]]



R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Wed Sep 28 02:34:44 2005

This archive was generated by hypermail 2.1.8 : Fri 03 Mar 2006 - 03:40:26 EST