[R] Error in opening .RData containing a genefilter object

From: David Ruau <David.Ruau_at_rwth-aachen.de>
Date: Wed 19 Oct 2005 - 22:37:32 EST


Hi,
I discover that when I save a workspace containing a genefilter (pkg from Bioconductor) object I cannot open no more after. I have to restore the .RData file from a backup to be able to start R again. I didn't upgrade to Version 2.2 but I'm not sure that it will solve the problem.
Did anyone have encounter the same problem? Below is a short r session to reproduce the error: ...
[Previously saved workspace restored]

> library(genefilter)

Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor

          Vignettes contain introductory material.  To view,
          simply type: openVignette()
          For details on reading vignettes, see
          the openVignette help page.

Loading required package: survival
Loading required package: splines
> f1 <- kOverA(5, 60)
> q()

Save workspace image? [y/n/c]: y
[computer:admin]$ r

R : Copyright 2005, The R Foundation for Statistical Computing Version 2.1.1 (2005-06-20), ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for a HTML browser interface to help. Type 'q()' to quit R.

Error in .initContents() : couldn't find function "isGeneric" Error: .onLoad failed in 'loadNamespace' for 'Biobase' Fatal error: unable to restore saved data in .RData

[gaia:admin]$



I am working under OS X 10.3.9.

David



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