Re: [R] R[1304] general protection rip - Error running R file in Batch mode

From: Srinivas Iyyer <srini_iyyer_bio_at_yahoo.com>
Date: Wed 22 Feb 2006 - 12:49:57 EST


Hi group,
I ran the file again and after 10 min. of run, the process got interrupted.

Here is the output of the file

$bash: R CMD BATCH grand.R > grand.log

 R CMD BATCH grand.R

/usr/local/lib64/R/bin/BATCH: line 55: 1758 Broken pipe ( echo "invisible(options(echo = TRUE))"; cat ${in}; echo ''; echo "proc.time()" )

      1760 Segmentation fault | ${R_HOME}/bin/R ${opts} >${out} 2>&1

Is this because of the excess query code in one .R file?

Any suggestions, will help me .

thanks
Sri

>
> I created a jumbo 100*54 = 5400 lines of code by
> replication.
>
> I saved this file as .R and ran it as:
> R CMD BATCH myfile.R..
>
> The program ran for ~40 mins. ( each operation takes
> 5
> mins). after going home, I checked the stats and saw
> that the program got aborted leaving 8 output files
> in
> directory.
>
> I checked /var/log/messages and found :
>
> localhost kernel: R[1304] general protection
> rip:2a988c919e rsp:7fbfff87f0 error:0
>
>
> postgres did not log any error message.
>
> This is my first time I am running my R code in
> BATCH
> mode. I am a new to programming in R and I have been
> working directly with R interface.
>
> Could any one guess what could have been the
> problem.
>
> Thanks
> Sri
>
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R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Received on Wed Feb 22 12:55:23 2006

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