[R] merging

From: Gavin Simpson <gavin.simpson_at_ucl.ac.uk>
Date: Wed 31 May 2006 - 04:08:10 EST


Dear List,

Given,

y <- matrix(c(0,1,1,1,0,0,0,4,4), ncol = 3, byrow = TRUE) rownames(y) <- c("a","b","c")
colnames(y) <- c("1","2","3")
y
y2 <- y[2:3, ]
rownames(y2) <- c("x","z")
y2

how can I stop

merge(y, y2, all = TRUE, sort = FALSE)

squishing the extra rows? Ideally I want the same as:

rbind(y, y2)

in this case. This is specific example of situation where two data matrices have same column variables and all I want is to stick the two sets of rows together, but I have been using merge for cases such as the one below, where the second matrix has extra column(s):

y3 <- matrix(c(0,1,1,1,0,0,0,4,4,5,6,7), ncol = 4, byrow = TRUE) rownames(y3) <- c("d","e","f")
colnames(y3) <- c("1","2","3","4")
y3
merge(y, y3, all = TRUE, sort = FALSE)

We don't know before hand if the columns will match. But I see now that even this doesn't work as I was expecting/thinking!

So I'm looking for a general way to merge two matrices such that the number of rows in the merged matrix is nrow(mat1) + nrow(mat2) and the number of columns in the merged matrix is length(unique(colnames(mat1), colnames(mat2).

Is there a function in R to do this, or can someone suggest a way to achieve this? My R version info is at the end.

Just to be clear, for the y, y3 example I want something like this returned:

  1 2 3 4
a 0 1 1 NA
b 1 0 0 NA
c 0 4 4 NA
d 0 1 1 1
e 0 0 0 4
f 4 5 6 7

and for the y, y2 example, I want something like this returned:

  1 2 3
a 0 1 1
b 1 0 0
c 0 4 4
x 1 0 0
z 0 4 4

Many thanks,

Gav

> version

               _
platform       i686-pc-linux-gnu
arch           i686
os             linux-gnu
system         i686, linux-gnu
status         Patched
major          2
minor          3.0
year           2006
month          05
day            03
svn rev        37978
language       R

version.string Version 2.3.0 Patched (2006-05-03 r37978)
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Gavin Simpson
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Received on Wed May 31 04:14:13 2006

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