[R] scripts to process array CGH data files from NimbleGen

From: Steven McKinney <smckinney_at_bccrc.ca>
Date: Tue 13 Jun 2006 - 06:45:02 EST

Before I reinvent the wheel, has anyone set up scripts to read in array CGH data files from NimbleGen, for use in the aCGH package or a similar package?

I have normalized NimbleGen files
([array_id]_[identifier]_normalized.txt in the NimbleGen naming scheme) several to a directory, to read in and use to create an aCGH object.

Any info appreciated.

Best

Steve McKinney

Steven McKinney

Statistician
Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre

smckinney@bccrc.ca



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