[R] error when compiling "stats" library in R-2.3.1 on Solaris x86

From: Dongseok Choi <choid_at_ohsu.edu>
Date: Thu 20 Jul 2006 - 06:53:40 EST


Hello,  

  I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers.   I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it.   Could you tell me how to fix this problem?  

f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o
f95   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o
cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 ld: fatal: File processing errors. No output written to stats.so *** Error code 1
make: Fatal error: Command failed for target `stats.so'

  I did not have any problem when I compiled v2.2.1 as below:  

cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o

f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o
cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o
f95 -xtarget=generic64   -PIC  -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o
cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm mkdir ../../../../library/stats/libs  

Thank you very much!!        

Dongseok Choi, Ph.D.
Assistant Professor
Division of Biostatistics
Department of Public Health & Preventive Medicine Oregon Health & Science University
3181 SW Sam Jackson Park Road, CB-669
Portland, OR 97239-3098
TEL) 503-494-5336
FAX) 503-494-4981
choid@ohsu.edu

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