Re: [R] error when compiling "stats" library in R-2.3.1 on Solaris x86

From: Dongseok Choi <choid_at_ohsu.edu>
Date: Thu 20 Jul 2006 - 08:02:39 EST


It was given iin the config.site.  

CC="cc -xtarget=generic64"
CFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" F77="f95 -xtarget=generic64"
FFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" CXX="CC -xtarget=generic64"
CXXFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" CPPFLAGS="-I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include"

I am not sure why it was not passed to f95 while it was OK with cc. I did not have any problem with R2.2.1.
Please let me know if you need any other info.  

Thanks again,
Dongseok

>>> "Prof Brian Ripley" <ripley@stats.ox.ac.uk> 7/19/2006 2:39 PM >>>

How did 'cc -xtarget=generic64' get there? AFAIK R does not know about it, so presumably you specified it for CC. You need to do the same thing for *all* the compilers, that is CC, CXX, F77 and FC.

The INSTALL file asked you to read the R-admin manual: there you will find a very similar example for 64-bit Sparc Solaris. That uses -xarch, which seems preferred to -xtarget (or at least to generic targets).

On Wed, 19 Jul 2006, Dongseok Choi wrote:

> Hello,
>
> I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers.
> I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it.
> Could you tell me how to fix this problem?
>
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o
> f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o
> cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm
> ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32
> ld: fatal: File processing errors. No output written to stats.so
> *** Error code 1
> make: Fatal error: Command failed for target `stats.so'
>
> I did not have any problem when I compiled v2.2.1 as below:
>
> cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o
> cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o
> f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o
> cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm
> mkdir ../../../../library/stats/libs
>
>
> Thank you very much!!
>
>
>
>
> Dongseok Choi, Ph.D.
> Assistant Professor
> Division of Biostatistics
> Department of Public Health & Preventive Medicine
> Oregon Health & Science University
> 3181 SW Sam Jackson Park Road, CB-669
> Portland, OR 97239-3098
> TEL) 503-494-5336
> FAX) 503-494-4981
> choid@ohsu.edu
>
>
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>
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>

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595




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Received on Thu Jul 20 09:34:46 2006

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