Re: [R] Sweave and tth

From: Frank E Harrell Jr <f.harrell_at_vanderbilt.edu>
Date: Thu 27 Jul 2006 - 01:15:47 EST

Kuhn, Max wrote:
> Dr. Harrell,
>

>> I tried odfWeave to create an OpenOffice file and found that it 
>> exhausted the memory of my large linux machine and took a long time to

>
>> run. 

>
> Do you have any details about the problem that you encountered? A bug
> that someone else had pointed out might be the culprit. I have the
> default image format as png, but since a lot of linux systems don't have
> that device automatically available to them, I have a switch for the
> device in odfWeaveControl:
>
> plotDevice = ifelse(.Platform$OS.type == "windows", "png", "bitmap"),
>
> The bitmap device units are in inches and the bmp device is in pixels.
> The bug is the default image size if 480 inches (whoops).
>
> Can you try using:
>
> odfWeaveControl(
> plotHeight = 5,
> plotWidth = 5,
> dispHeight = 5,
> dispWidth = 5)
>
> in your odfWeave call and let me know if this was the issue? I was able
> to reproduce the error on our linux systems and this fix worked (strange
> that the package passes R CMD check though).

Max,

I should have contacted you first - sorry about that. png is working fine on my debian linux system, so I just ran

library(odfWeave)
odfWeave('/usr/local/lib/R/site-library/odfWeave/examples/examples.odt',

   '/tmp/out.odt',
   control=
    odfWeaveControl(plotHeight = 5,plotWidth = 5,dispHeight = 5,dispWidth = 5))

and it ran extremely fast, creating out.odt that loaded extremely fast into OpenOffice writer, unlike the first out.odt I had tried.

If you develop a way to include high-resolution graphics that will be even better.

I have updated http://biostat.mc.vanderbilt.edu/SweaveConvert accordingly.

>
> If this works, Section 7 of the odfWeave manual lists two command line
> tools (not included in my package) that can do the conversion from odt
> to Word (or other formats)

Excellent

Thanks!
Frank

>

>> I really appreciate Max Kuhn's efforts with odfWeave and hope to keep

> up
>> with its development.

>
> No problem. I'll be releasing a bug fix version to solve the device
> units issue. Also, others have reported problems with locales. I believe
> I have a fix for this issue too.
>
>> Thanks.
>> -- 
>> Frank E Harrell Jr   Professor and Chair           School of Medicine
>>                       Department of Biostatistics   Vanderbilt

> University


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