[R] String frequencies in rows

From: Mario Falchi <mariofalchi_at_yahoo.com>
Date: Thu 27 Jul 2006 - 00:34:07 EST


Hi All,  

I’m trying to evaluate the frequency of different strings in each row of a data.frame : INPUT:
ID G1 G2 G3 G4 … GN

1 AA BB AB AB … 
2 BB AB AB AA … 
3 AC CC AC AA … 
4  BB BB BB BB… 

The number of different strings can vary in each row.  

My solution has been:
for (i in 1:length(INPUT[,1])){
 b=as.data.frame(table(t((INPUT[i,2:5])))) <some operations using the string values and frequencies> (e.g. b for i==1 is:
 AA 1
 BB 1
 AB 2 )
}

However my dataframe contains thousands rows and this script takes a lot of time. Could someone suggest me a faster way?  

Thank you very much,
Mario Falchi

        [[alternative HTML version deleted]]



R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Thu Jul 27 01:55:55 2006

Archive maintained by Robert King, hosted by the discipline of statistics at the University of Newcastle, Australia.
Archive generated by hypermail 2.1.8, at Thu 27 Jul 2006 - 02:16:50 EST.

Mailing list information is available at https://stat.ethz.ch/mailman/listinfo/r-help. Please read the posting guide before posting to the list.