[R-pkgs] New package: bit 1.0

From: Jens Oehlschlägel <jens.oehlschlaegel_at_truecluster.com>
Date: Fri, 10 Oct 2008 18:08:51 +0200

Dear R community,

Package 'bit' Version 1.0 is available on CRAN. It provides bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics.

With bit vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and factor 32 more speed on boolean operations. With this speed gain it even pays-off to convert to bit in order to avoid a single boolean operation on logicals or a single set operation on (longer) integer subscripts, the pay-off is dramatic when such components are used more than once.

Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%.

Functions 'which' and 'xor' are made S3 generic, 'xor.default' is implemented much faster than in base R (this should go into base R).

The package has automated regression-tests and is hopefully useful for better handling large datasets, together with packages 'rindex' and 'ff'.

Best regards

Jens Oehlschlägel
Munich, 10.10.2008

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https://stat.ethz.ch/mailman/listinfo/r-packages Received on Sun 12 Oct 2008 - 06:10:21 EST

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