Re: [Rd] Build failure with this morning's R-alpha

From: Prof Brian Ripley <ripley_at_stats.ox.ac.uk>
Date: Tue 04 Apr 2006 - 06:12:20 GMT

Note that libR.so was itself linked against -lm, so should resolve its dependencies there. The front end has never been linked against -lm, nor do I see that anything should have changed for a long time in the front-end.

I was able to build a shared-library version of the current svn 36743 (I was unable to identify which 'last night' this was, and 'r-base-2.2.1.svn37626' seemed contradictory) from scratch on FC3 on ix86 and x86_64 (and I built a slightly earlier version on Solaris yesterday).

On Mon, 3 Apr 2006, Dirk Eddelbuettel wrote:

>
> Trying to build a Debian snapshot of R-alpha based on last night's tarball,
> it fails with what looks like a missing -lm linking directive:
>
> [...]
> gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c version.c -o version.o
> gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c vfonts.c -o vfonts.o
> g77 -fpic -O2 -c xxxpr.f -o xxxpr.o
> gcc -shared -o libR.so Rembedded.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o 2>/dev/null` -!
 lb!
> las-3 -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm -lgcc_s -lreadline -lpcre -lbz2 -lz -ldl -lm
> make[5]: Entering directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> mkdir -p -- /tmp/buildd/r-base-2.2.1.svn37626/bin/exec
> mkdir -p -- /tmp/buildd/r-base-2.2.1.svn37626/lib
> make[5]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> make[4]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> make[4]: Entering directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c Rmain.c -o Rmain.o
> gcc -Wl,--export-dynamic -o R.bin Rmain.o -L../../lib -lR
> ../../lib/libR.so: undefined reference to `isfinite'
> collect2: ld returned 1 exit status
> make[4]: *** [R.bin] Error 1
> make[4]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> make[3]: *** [R] Error 2
> make[3]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main'
> make[2]: *** [R] Error 1
> make[2]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src'
> make[1]: *** [R] Error 1
> make[1]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626'
> make: *** [make-arch-stamp] Error 2
> pbuilder: Failed autobuilding of package
>
> I checked the svn logs, as it doesn't looks like this was addressed since the
> tarball was rolled. Am I the only one to have this happen?
>
> Dirk
>
>

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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Received on Tue Apr 04 16:37:32 2006

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