[R] Ubuntu vs. Windows

From: Doran, Harold <HDoran_at_air.org>
Date: Tue, 22 Apr 2008 16:19:06 -0400


Dear List:

I am very much a unix neophyte, but recently had a Ubuntu box installed in my office. I commonly use Windows XP with 3 GB RAM on my machine and the Ubuntu machine is exactly the same as my windows box (e.g., processor and RAM) as far as I can tell.

Now, I recently had to run a very large lmer analysis using my windows machine, but was unable to due to memory limitations, even after increasing all the memory limits in R (which I think is a 2gig max according to the FAQ for windows). So, to make this computationally feasible, I had to sample from my very big data set and then run the analysis. Even still, it would take something on the order of 45 mins to 1 hr to get parameter estimates. (BTW, SAS Proc nlmixed was even worse and kept giving execution errors until the data set was very small and then it ran for a long time)

However, I just ran the same analysis on the Ubuntu machine with the full, complete data set, which is very big and lmer gave me back parameter estimates in less than 5 minutes.

Because I have so little experience with Ubuntu, I am quite pleased and would like to understand this a bit better. Does this occur because R is a bit friendlier with unix somehow? Or, is this occuring because unix somehow has more efficient methods for memory allocation?

I wish I knew enough to even ask the right questions. So, I welcome any enlightenment members may add.



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